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How to Run PAYE Real Time Information Submissions Correctly Every Pay Run

PAYE Real Time Information (RTI) reporting is a cornerstone of payroll compliance for UK businesses. Ensuring correct and timely PAYE Real Time Information submissions to HMRC each pay run is essential for avoiding penalties, maintaining regulatory compliance, and upholding financial governance. This article offers a practical guide for executing PAYE RTI submissions effectively, highlighting accuracy, auditability, and operational efficiency, with real-world scenarios to support your approach.

Understanding PAYE Real Time Information (RTI) Obligations

HMRC requires employers to report PAYE information electronically on or before each employee payment date. Under the RTI regime, details of pay, deductions, and National Insurance must be submitted in real time, not just annually. This provides HMRC with up-to-date data for tax collection and Universal Credit assessments. For most SMEs, this means submitting a Full Payment Submission (FPS) every pay run, and occasionally an Employer Payment Summary (EPS) when adjustments are necessary.

Preparing for Each Pay Run: Data Accuracy and Checks

Preparation is foundational to accurate PAYE Real Time Information submissions. Before each pay period ends, ensure all payroll data is up to date and accurate. This includes new starters, leavers, salary changes, statutory payments, and deductions. Data errors at this stage can lead to RTI rejections, HMRC penalties, or issues with employee tax records.

  • Verify employee details, including names, NI numbers, and addresses.
  • Review any changes in contracts or pay rates for the period.
  • Check for outstanding queries or late timesheets.
  • Ensure statutory payments (SSP, SMP) are processed correctly.
  • Cross-check deductions for pension contributions and student loans.

Implementing a robust checklist or using payroll software with built-in data validation reduces the risk of errors and streamlines your pre-submission workflow. For example, consider a scenario where an incorrect National Insurance number is entered for a new starter. Without validation, this could result in a rejected FPS, delayed payments, and additional work to correct the record. Automated checks catch such errors before submission, saving time and safeguarding compliance.

Processing Payroll and Creating the FPS Submission

The Full Payment Submission (FPS) is the primary RTI file sent each pay run. It details pay, tax, National Insurance, and other deductions for every employee paid in that period. Most payroll software generates the FPS automatically after payroll is processed, but it remains your responsibility to review and approve the data before submission.

  • Run payroll calculations for the period, confirming gross pay and deductions.
  • Produce payslips for employees and review payroll journals.
  • Generate the FPS file in your payroll system and review the summary.
  • Check submission deadlines: typically on or before each pay date.
  • Submit the FPS electronically to HMRC using recognised payroll software.

Failure to submit on time can result in automatic late filing penalties, so embedding this process as part of your regular payroll routine is essential for payroll compliance and reporting. A common real-world mistake occurs when a leaver is not marked as such in the payroll, leading to incorrect FPS data and potential tax code issues; always double-check leaver status before submission.

Handling Adjustments: Employer Payment Summary (EPS)

There are occasions when you need to submit an EPS, such as reclaiming statutory payments, reporting no payments in a period, or correcting earlier submissions. The EPS should be submitted after the FPS, ideally before the 19th of the following month to ensure HMRC records are updated ahead of any payment deadlines.

  • Claim statutory payments (e.g., SMP, SPP, SAP, ShPP).
  • Report no payments made in a pay period.
  • Adjust for CIS deductions suffered.
  • Correct overpaid or underpaid PAYE liabilities.

Documenting adjustment reasons and retaining supporting evidence is vital for audit trails and future HMRC queries. For instance, if you need to reclaim Statutory Sick Pay via an EPS, keep copies of employee illness records and evidence to support your claim. Many SMEs benefit from keeping a centralised record of all EPS submissions and the rationale behind each.

Reconciling PAYE Liabilities and Payments

After each FPS and EPS submission, reconcile your payroll calculations against HMRC’s online account. Ensure that the PAYE and National Insurance liabilities generated by your payroll software match the amounts shown by HMRC. Discrepancies can arise from late filings, corrections, or software errors, and resolving these early prevents payment issues and interest charges.

  • Cross-check payroll journals with HMRC’s PAYE account statements.
  • Investigate and resolve any mismatches promptly.
  • Retain reconciliation records for financial governance and audit purposes.

This reconciliation is also a crucial step for accurate financial reporting from your books and for preparing year-end accounts. For example, if your payroll shows a lower liability than HMRC’s records due to a missed EPS, prompt investigation and correction avoids late payment interest and future compliance scrutiny.

Ensuring Ongoing Compliance and Governance

HMRC expects employers to demonstrate robust controls around payroll and PAYE Real Time Information submissions. This means not only making accurate, timely filings, but also having an audit trail of approvals, amendments, and communications. Consider implementing documented payroll procedures, regular internal reviews, and clear segregation of duties between payroll processing and review functions.

  • Maintain payroll procedure manuals and update them for regulatory changes.
  • Schedule periodic compliance reviews or audits, especially ahead of tax year end.
  • Train payroll and finance staff on HMRC requirements and software updates.
  • Ensure retention of all payroll, FPS, and EPS records for at least three years.

For more complex scenarios, such as managing international employees, benefits in kind, or off-payroll workers, consider seeking specialist tax preparation and compliance support to ensure you meet all HMRC obligations and avoid costly missteps.

Common Pitfalls and How to Avoid Them

Even experienced payroll teams encounter RTI challenges. Common pitfalls include late filing, incorrect employee data, failing to process leavers correctly, and missing EPS deadlines. These issues can lead to penalties, employee tax code errors, or HMRC compliance interventions.

  • Automate prompts for submission deadlines in your payroll calendar.
  • Regularly audit employee data for completeness and accuracy.
  • Provide clear leaver processes to ensure accurate final FPS reporting.
  • Monitor HMRC communications for rejected submissions or coding notices.

Proactive management and regular process reviews are the best defences against these risks. Embedding compliance into your payroll operations not only ensures regulatory adherence but also builds trust with employees and stakeholders. For example, a missed FPS deadline can be avoided by automating reminders and delegating responsibility within your payroll team.

Conclusion

Running PAYE Real Time Information submissions correctly every pay run is central to payroll governance and HMRC compliance. With robust preparation, careful review, and ongoing process improvement, UK SMEs can minimise risk and ensure their payroll operations stand up to scrutiny. For organisations with more complex payroll or compliance requirements, leveraging expert support is an investment in peace of mind and long-term financial stability.

  • Prepare payroll data thoroughly before each pay run.
  • Use payroll software to validate and submit FPS and EPS accurately.
  • Reconcile liabilities with HMRC every period for accuracy.
  • Document all adjustments and keep comprehensive audit trails.
  • Stay proactive with compliance reviews and ongoing staff training.

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